MEGAHIT: an ultra-fast single-node solution for large and complex metagenomics assembly via succinct de Bruijn graph

Dinghua Li; Chi-Man Liu; Ruibang Luo; Kunihiko Sadakane; Tak‐Wah Lam

Năm xuất bản2015

Nguồn học thuậtBioinformatics

Định danhDOI 10.1093/bioinformatics/btv033

TRÍCH DẪN ĐỀ XUẤT

Dinghua Li; Chi-Man Liu; Ruibang Luo; Kunihiko Sadakane; Tak‐Wah Lam (2015). MEGAHIT: an ultra-fast single-node solution for large and complex metagenomics assembly via succinct de Bruijn graph. Bioinformatics, 31(10), 1674-1676. https://doi.org/10.1093/bioinformatics/btv033

Thông tin thư mục

Nguồn/Tạp chí: Bioinformatics
Tập: 31
Số: 10
Trang: 1674-1676
Nhà xuất bản: Oxford University Press
DOI: 10.1093/bioinformatics/btv033 ↗

Từ khóa

Contig; Metagenomics; De Bruijn graph; Sequence assembly; Computer science; De Bruijn sequence; Software; k-mer; Graphics; Graph; Node (physics); Normalization (sociology); Graphics processing unit; Parallel computing; Computational biology; Theoretical computer science; Biology; DNA sequencing; Computer graphics (images); Mathematics; Operating system; Combinatorics; Genome; Engineering; Genetics